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Scgdelta sarcoglycan delta [ Polistes canadensis ]

Gene ID: 106787167, updated on 10-Oct-2024

Summary

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Gene symbol
Scgdelta
Gene description
sarcoglycan delta
See related
EnsemblRapid:LOC106787167
Gene type
protein coding
RefSeq status
MODEL
Organism
Polistes canadensis
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Vespoidea; Vespidae; Polistinae; Polistini; Polistes
Orthologs
fruit fly honey bee all
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Genomic context

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See Scgdelta in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
100 current ASM131383v1 (GCF_001313835.1) Unplaced Scaffold NW_014569641.1 (237093..430515)

NW_014569641.1Genomic Context describing neighboring genes Neighboring gene otopetrin-3-like Neighboring gene uncharacterized LOC106787158 Neighboring gene odorant receptor 67a-like Neighboring gene phosphodiesterase 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014569641.1 Unplaced Scaffold Reference ASM131383v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polistes canadensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM131383v1

Genomic

  1. NW_014569641.1 Reference ASM131383v1

    Range
    237093..430515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014749287.1 → XP_014604773.1  zeta-sarcoglycan isoform X1

    Related
    XP_014604773.1, XM_014749287.1
    Conserved Domains (1) summary
    pfam04790
    Location:140 → 443
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_014749290.1 → XP_014604776.1  zeta-sarcoglycan isoform X1

    Related
    XP_014604776.1, XM_014749290.1
    Conserved Domains (1) summary
    pfam04790
    Location:140 → 443
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  3. XM_014749288.1 → XP_014604774.1  zeta-sarcoglycan isoform X1

    Related
    XP_014604774.1, XM_014749288.1
    Conserved Domains (1) summary
    pfam04790
    Location:140 → 443
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  4. XM_014749291.1 → XP_014604777.1  zeta-sarcoglycan isoform X1

    Related
    XP_014604777.1, XM_014749291.1
    Conserved Domains (1) summary
    pfam04790
    Location:140 → 443
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  5. XM_014749295.1 → XP_014604781.1  zeta-sarcoglycan isoform X1

    Related
    XP_014604781.1, XM_014749295.1
    Conserved Domains (1) summary
    pfam04790
    Location:140 → 443
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  6. XM_014749289.1 → XP_014604775.1  zeta-sarcoglycan isoform X1

    Related
    XP_014604775.1, XM_014749289.1
    Conserved Domains (1) summary
    pfam04790
    Location:140 → 443
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  7. XM_014749292.1 → XP_014604778.1  zeta-sarcoglycan isoform X1

    Related
    XP_014604778.1, XM_014749292.1
    Conserved Domains (1) summary
    pfam04790
    Location:140 → 443
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  8. XM_014749296.1 → XP_014604782.1  zeta-sarcoglycan isoform X2

    Related
    XP_014604782.1, XM_014749296.1
    Conserved Domains (1) summary
    pfam04790
    Location:61 → 364
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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