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LRTM1 leucine rich repeats and transmembrane domains 1 [ Equus caballus (horse) ]

Gene ID: 106781789, updated on 17-Aug-2024

Summary

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Official Symbol
LRTM1provided by VGNC
Official Full Name
leucine rich repeats and transmembrane domains 1provided by VGNC
Primary source
VGNC:VGNC:19810
Gene type
protein coding
RefSeq status
MODEL
Organism
Equus caballus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
Orthologs
human mouse all
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Genomic context

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See LRTM1 in Genome Data Viewer
Location:
chromosome: 16
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current EquCab3.0 (GCF_002863925.1) 16 NC_009159.3 (34570579..34599521)

Chromosome 16 - NC_009159.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111768323 Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 3 Neighboring gene transfer RNA isoleucine (anticodon AAU) Neighboring gene uncharacterized LOC111768324 Neighboring gene selenoprotein K

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_009159.3 Chromosome 16 Reference EquCab3.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and transmembrane domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference EquCab3.0 Primary Assembly

Genomic

  1. NC_009159.3 Reference EquCab3.0 Primary Assembly

    Range
    34570579..34599521
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023621280.1 → XP_023477048.1  leucine-rich repeat and transmembrane domain-containing protein 1

    UniProtKB/TrEMBL
    F7C1Q6
    Conserved Domains (3) summary
    sd00033
    Location:66 → 84
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:107 → 167
    LRR_8; Leucine rich repeat
    cl26018
    Location:55 → 203
    NEL; C-terminal novel E3 ligase, LRR-interacting
Nucleotide Protein
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