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LOC106780166 1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic [ Vigna radiata ]

Gene ID: 106780166, updated on 11-Jan-2024

Summary

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Gene symbol
LOC106780166
Gene description
1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna radiata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC106780166 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Vradiata_ver6 (GCF_000741045.1) Unplaced Scaffold NW_014542541.1 (214686..226424, complement)

NW_014542541.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106780159 Neighboring gene CCR4-NOT transcription complex subunit 9

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014542541 Unplaced Scaffold Reference Vradiata_ver6 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,4-alpha-glucan branching enzyme activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cation binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycogen biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vigna radiata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vradiata_ver6 Primary Assembly

Genomic

  1. NW_014542541.1 Reference Vradiata_ver6 Primary Assembly

    Range
    214686..226424 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014668421.2 → XP_014523907.1  1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic

    UniProtKB/TrEMBL
    A0A1S3W0C4
    Conserved Domains (4) summary
    PLN03244
    Location:1 → 899
    PLN03244; alpha-amylase; Provisional
    pfam02806
    Location:799 → 893
    Alpha-amylase_C; Alpha amylase, C-terminal all-beta domain
    cl07893
    Location:380 → 765
    AmyAc_family; Alpha amylase catalytic domain family
    cl09101
    Location:329 → 376
    E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
Nucleotide Protein
Heading Accession and Version

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