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LOC106768182 polygalacturonase At1g48100 [ Vigna radiata ]

Gene ID: 106768182, updated on 11-Jan-2024

Summary

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Gene symbol
LOC106768182
Gene description
polygalacturonase At1g48100
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna radiata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC106768182 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Vradiata_ver6 (GCF_000741045.1) 1 NC_028351.1 (982153..986181)

Chromosome 1 - NC_028351.1Genomic Context describing neighboring genes Neighboring gene DNA (cytosine-5)-methyltransferase DRM2 Neighboring gene uncharacterized LOC106753250 Neighboring gene ADP-ribosylation factor Neighboring gene myb-related protein 305-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_028351.1 Chromosome 1 Reference Vradiata_ver6 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase At1g48100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vigna radiata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vradiata_ver6 Primary Assembly

Genomic

  1. NC_028351.1 Reference Vradiata_ver6 Primary Assembly

    Range
    982153..986181
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014653176.2 → XP_014508662.1  polygalacturonase At1g48100

    UniProtKB/TrEMBL
    A0A1S3URQ2
    Conserved Domains (2) summary
    pfam00295
    Location:76 → 389
    Glyco_hydro_28; Glycosyl hydrolases family 28
    cl19188
    Location:44 → 421
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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