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LOC106768159 cellulose synthase A catalytic subunit 7 [UDP-forming] [ Vigna radiata ]

Gene ID: 106768159, updated on 11-Jan-2024

Summary

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Gene symbol
LOC106768159
Gene description
cellulose synthase A catalytic subunit 7 [UDP-forming]
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna radiata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC106768159 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
13
Annotation release Status Assembly Chr Location
101 current Vradiata_ver6 (GCF_000741045.1) 7 NC_028357.1 (44151577..44156794)

Chromosome 7 - NC_028357.1Genomic Context describing neighboring genes Neighboring gene heat shock 70 kDa protein Neighboring gene translation initiation factor IF3-4, chloroplastic Neighboring gene pentatricopeptide repeat-containing protein At4g30700 Neighboring gene AUGMIN subunit 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_028357.1 Chromosome 7 Reference Vradiata_ver6 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cellulose synthase (UDP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellulose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in plant-type primary cell wall biogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in trans-Golgi network IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cellulose synthase A catalytic subunit 7 [UDP-forming]

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vigna radiata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vradiata_ver6 Primary Assembly

Genomic

  1. NC_028357.1 Reference Vradiata_ver6 Primary Assembly

    Range
    44151577..44156794
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014653141.2 → XP_014508627.1  cellulose synthase A catalytic subunit 7 [UDP-forming] isoform X1

    UniProtKB/TrEMBL
    A0A1S3URL9
    Conserved Domains (3) summary
    PLN02189
    Location:1 → 1033
    PLN02189; cellulose synthase
    pfam14569
    Location:30 → 95
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:493 → 783
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_014653142.2 → XP_014508628.1  cellulose synthase A catalytic subunit 7 [UDP-forming] isoform X2

    UniProtKB/TrEMBL
    A0A1S3URB6
    Conserved Domains (3) summary
    PLN02189
    Location:1 → 1032
    PLN02189; cellulose synthase
    pfam14569
    Location:30 → 95
    zf-UDP; Zinc-binding RING-finger
    cl11394
    Location:492 → 782
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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