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LOC106761866 callose synthase 10 [ Vigna radiata ]

Gene ID: 106761866, updated on 11-Jan-2024

Summary

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Gene symbol
LOC106761866
Gene description
callose synthase 10
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna radiata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC106761866 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
53
Annotation release Status Assembly Chr Location
101 current Vradiata_ver6 (GCF_000741045.1) 5 NC_028355.1 (10996238..11058162)

Chromosome 5 - NC_028355.1Genomic Context describing neighboring genes Neighboring gene B3 domain-containing protein Os01g0905400 Neighboring gene uncharacterized LOC106760315 Neighboring gene uncharacterized mitochondrial protein AtMg00810-like Neighboring gene zinc finger CCCH domain-containing protein 43

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_028355.1 Chromosome 5 Reference Vradiata_ver6 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De Novo Characterization of the Mung Bean Transcriptome and Transcriptomic Analysis of Adventitious Rooting in Seedlings Using RNA-Seq. Li SW, et al. PLoS One, 2015. PMID 26177103, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1,3-beta-D-glucan synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in (1->3)-beta-D-glucan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of 1,3-beta-D-glucan synthase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
callose synthase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vigna radiata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vradiata_ver6 Primary Assembly

Genomic

  1. NC_028355.1 Reference Vradiata_ver6 Primary Assembly

    Range
    10996238..11058162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014645446.2 → XP_014500932.1  callose synthase 10 isoform X1

    UniProtKB/TrEMBL
    A0A1S3U4I8
    Conserved Domains (2) summary
    pfam02364
    Location:1033 → 1773
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:349 → 458
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  2. XM_022780604.1 → XP_022636325.1  callose synthase 10 isoform X2

    UniProtKB/TrEMBL
    A0A3Q0EX47
    Conserved Domains (2) summary
    pfam02364
    Location:764 → 1504
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:79 → 189
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1

  3. XM_022780605.1 → XP_022636326.1  callose synthase 10 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0EYT7
    Conserved Domains (2) summary
    pfam02364
    Location:757 → 1497
    Glucan_synthase; 1,3-beta-glucan synthase component
    pfam14288
    Location:72 → 182
    FKS1_dom1; 1,3-beta-glucan synthase subunit FKS1, domain-1
Nucleotide Protein
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