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LOC106755092 acidic endochitinase-like [ Vigna radiata ]

Gene ID: 106755092, updated on 11-Jan-2024

Summary

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Gene symbol
LOC106755092
Gene description
acidic endochitinase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna radiata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
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Genomic context

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See LOC106755092 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Vradiata_ver6 (GCF_000741045.1) 2 NC_028352.1 (21900052..21901316, complement)

Chromosome 2 - NC_028352.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111240820 Neighboring gene uncharacterized LOC106756225 Neighboring gene acidic endochitinase-like Neighboring gene uncharacterized LOC106753324

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_028352.1 Chromosome 2 Reference Vradiata_ver6 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acidic endochitinase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vigna radiata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vradiata_ver6 Primary Assembly

Genomic

  1. NC_028352.1 Reference Vradiata_ver6 Primary Assembly

    Range
    21900052..21901316 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014637191.2 → XP_014492677.1  acidic endochitinase-like

    UniProtKB/TrEMBL
    A0A1S3TG11
    Conserved Domains (2) summary
    cd02877
    Location:27 → 296
    GH18_hevamine_XipI_class_III; This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that ...
    pfam00704
    Location:29 → 287
    Glyco_hydro_18; Glycosyl hydrolases family 18
Nucleotide Protein
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