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LOC106754480 polygalacturonase-like [ Vigna radiata ]

Gene ID: 106754480, updated on 11-Jan-2024

Summary

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Gene symbol
LOC106754480
Gene description
polygalacturonase-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Vigna radiata
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Vigna
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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See LOC106754480 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Vradiata_ver6 (GCF_000741045.1) Unplaced Scaffold NW_014543537.1 (403..1295, complement)

NW_014543537.1Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014543537 Unplaced Scaffold Reference Vradiata_ver6 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables polygalacturonase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polygalacturonase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Vigna radiata Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Vradiata_ver6 Primary Assembly

Genomic

  1. NW_014543537.1 Reference Vradiata_ver6 Primary Assembly

    Range
    403..1295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014636496.2 → XP_014491982.1  polygalacturonase-like

    UniProtKB/TrEMBL
    A0A1S3TE01
    Conserved Domains (1) summary
    cl19188
    Location:3 → 237
    PL-6; Polysaccharide Lyase Family 6
Nucleotide Protein
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