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Tmtc3 Transmembrane O-mannosyltransferase targeting cadherins 3 [ Dinoponera quadriceps ]

Gene ID: 106750732, updated on 1-Oct-2024

Summary

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Gene symbol
Tmtc3
Gene description
Transmembrane O-mannosyltransferase targeting cadherins 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Dinoponera quadriceps
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae; Ponerini; Dinoponera
Orthologs
honey bee all
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Genomic context

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See Tmtc3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
100 current ASM131382v1 (GCF_001313825.1) Unplaced Scaffold NW_014560308.1 (165776..173546, complement)

NW_014560308.1Genomic Context describing neighboring genes Neighboring gene anne boleyn Neighboring gene insulin-like peptide 2 Neighboring gene probable ATP-dependent RNA helicase YTHDC2 Neighboring gene von Willebrand factor A domain-containing protein c12.2 Neighboring gene uncharacterized LOC106750686

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014560308.1 Unplaced Scaffold Reference ASM131382v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane and TPR repeat-containing protein CG4050

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dinoponera quadriceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM131382v1

Genomic

  1. NW_014560308.1 Reference ASM131382v1

    Range
    165776..173546 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014631258.1 → XP_014486744.1  transmembrane and TPR repeat-containing protein CG4050 isoform X1

    UniProtKB/TrEMBL
    A0A6P3Y9T9
    Conserved Domains (6) summary
    COG0457
    Location:510 → 769
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:565 → 592
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:598 → 631
    TPR_1; Tetratricopeptide repeat
    pfam07719
    Location:737 → 771
    TPR_2; Tetratricopeptide repeat
    pfam08409
    Location:259 → 332
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:446 → 512
    TPR_11; TPR repeat

  2. XM_014631260.1 → XP_014486746.1  transmembrane and TPR repeat-containing protein CG4050 isoform X3

    UniProtKB/TrEMBL
    A0A6P3Y6U3
    Conserved Domains (5) summary
    COG0457
    Location:510 → 769
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:565 → 592
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:598 → 631
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:259 → 332
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:446 → 512
    TPR_11; TPR repeat

  3. XM_014631259.1 → XP_014486745.1  transmembrane and TPR repeat-containing protein CG4050 isoform X2

    UniProtKB/TrEMBL
    A0A6P3Y778
    Conserved Domains (5) summary
    COG0457
    Location:510 → 769
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:565 → 592
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:598 → 631
    TPR_1; Tetratricopeptide repeat
    pfam08409
    Location:259 → 332
    DUF1736; Domain of unknown function (DUF1736)
    pfam13414
    Location:446 → 512
    TPR_11; TPR repeat
Nucleotide Protein
Heading Accession and Version

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