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C1GalTA Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 [ Dinoponera quadriceps ]

Gene ID: 106746754, updated on 10-Oct-2024

Summary

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Gene symbol
C1GalTA
Gene description
Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Dinoponera quadriceps
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae; Ponerini; Dinoponera
Orthologs
fruit fly honey bee all
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Genomic context

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See C1GalTA in Genome Data Viewer
Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
100 current ASM131382v1 (GCF_001313825.1) Unplaced Scaffold NW_014556124.1 (2061700..2067651, complement)

NW_014556124.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106746654 Neighboring gene mitochondrial ribosomal protein L50 Neighboring gene mediator complex subunit skuld Neighboring gene mitochondrial import inner membrane translocase subunit Tim10 B-like Neighboring gene TRAPP subunit 20 Neighboring gene TATA-box binding protein associated factor 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014556124.1 Unplaced Scaffold Reference ASM131382v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome analysis in venom gland of the predatory giant ant Dinoponera quadriceps: insights into the polypeptide toxin arsenal of hymenopterans. Torres AF, et al. PLoS One, 2014. PMID 24498135, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in O-glycan processing, core 1 IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dinoponera quadriceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM131382v1

Genomic

  1. NW_014556124.1 Reference ASM131382v1

    Range
    2061700..2067651 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014623734.1 → XP_014479220.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3XMR7
    Conserved Domains (1) summary
    cl21608
    Location:115 → 274
    Galactosyl_T; Galactosyltransferase

  2. XM_014623733.1 → XP_014479219.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3XMR7
    Conserved Domains (1) summary
    cl21608
    Location:115 → 274
    Galactosyl_T; Galactosyltransferase

  3. XM_014623738.1 → XP_014479224.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3XMR7
    Conserved Domains (1) summary
    cl21608
    Location:115 → 274
    Galactosyl_T; Galactosyltransferase

  4. XM_014623739.1 → XP_014479225.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X2

    UniProtKB/TrEMBL
    A0A6P3XLC2
    Conserved Domains (1) summary
    cl21608
    Location:111 → 270
    Galactosyl_T; Galactosyltransferase

  5. XM_014623735.1 → XP_014479221.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3XMR7
    Conserved Domains (1) summary
    cl21608
    Location:115 → 274
    Galactosyl_T; Galactosyltransferase

  6. XM_014623736.1 → XP_014479222.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3XMR7
    Conserved Domains (1) summary
    cl21608
    Location:115 → 274
    Galactosyl_T; Galactosyltransferase

  7. XM_014623737.1 → XP_014479223.1  glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 isoform X1

    UniProtKB/TrEMBL
    A0A6P3XMR7
    Conserved Domains (1) summary
    cl21608
    Location:115 → 274
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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