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rt Protein O-mannosyltransferase rt [ Dinoponera quadriceps ]

Gene ID: 106743891, updated on 10-Oct-2024

Summary

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Gene symbol
rt
Gene description
Protein O-mannosyltransferase rt
Gene type
protein coding
RefSeq status
MODEL
Organism
Dinoponera quadriceps
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Formicoidea; Formicidae; Ponerinae; Ponerini; Dinoponera
Orthologs
fruit fly honey bee all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM131382v1 (GCF_001313825.1) Unplaced Scaffold NW_014554295.1 (344466..351635, complement)

NW_014554295.1Genomic Context describing neighboring genes Neighboring gene Schwannomin interacting protein 1 Neighboring gene Rho-associated, coiled-coil containing protein kinase 2 Neighboring gene uncharacterized LOC106743904 Neighboring gene ATPase WRNIP1-like Neighboring gene UPF0585 protein C16orf13 homolog A Neighboring gene dnaJ homolog subfamily C member 21

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_014554295.1 Unplaced Scaffold Reference ASM131382v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Dinoponera quadriceps Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM131382v1

Genomic

  1. NW_014554295.1 Reference ASM131382v1

    Range
    344466..351635 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014618154.1 → XP_014473640.1  protein O-mannosyltransferase 1

    UniProtKB/TrEMBL
    A0A6P3X5S3
    Conserved Domains (4) summary
    smart00472
    Location:359 → 414
    MIR; Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases
    COG1928
    Location:59 → 784
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
    pfam02366
    Location:82 → 327
    PMT; Dolichyl-phosphate-mannose-protein mannosyltransferase
    pfam16192
    Location:579 → 781
    PMT_4TMC; C-terminal four TMM region of protein-O-mannosyltransferase
Nucleotide Protein
Heading Accession and Version

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