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PKD1L3 polycystin 1 like 3, transient receptor potential channel interacting [ Alligator mississippiensis (American alligator) ]

Gene ID: 106739387, updated on 13-Mar-2024

Summary

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Gene symbol
PKD1L3
Gene description
polycystin 1 like 3, transient receptor potential channel interacting
Locus tag
Y1Q_0016940
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See PKD1L3 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 10 NC_081833.1 (77527976..77534100)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017709931.1 (25..4233, complement)

Chromosome 10 - NC_081833.1Genomic Context describing neighboring genes Neighboring gene DEAH-box helicase 38 Neighboring gene haptoglobin Neighboring gene dihydroorotate dehydrogenase (quinone) Neighboring gene zinc finger X-linked protein ZXDB-like Neighboring gene IST1 factor associated with ESCRT-III

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detection of mechanical stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polycystin-1-like protein 3
Names
polycystic kidney disease protein 1-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081833.1 Reference rAllMis1 Primary Assembly

    Range
    77527976..77534100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059714016.1 → XP_059569999.1  polycystin-1-like protein 3 isoform X1

  2. XM_059714017.1 → XP_059570000.1  polycystin-1-like protein 3 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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