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GCNT4 glucosaminyl (N-acetyl) transferase 4 [ Alligator mississippiensis (American alligator) ]

Gene ID: 106737261, updated on 8-May-2024

Summary

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Gene symbol
GCNT4
Gene description
glucosaminyl (N-acetyl) transferase 4
See related
EnsemblRapid:ENSAMIG00015022960
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See GCNT4 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 3 NC_081826.1 (254023510..254048996, complement)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017707593.1 (4232810..4258527)

Chromosome 3 - NC_081826.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 169 member A Neighboring gene NSA2 ribosome biogenesis factor Neighboring gene ankyrin repeat domain 31 Neighboring gene 3-hydroxy-3-methylglutaryl-CoA reductase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4
Names
glucosaminyl (N-acetyl) transferase 4, core 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081826.1 Reference rAllMis1 Primary Assembly

    Range
    254023510..254048996 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019482475.2 → XP_019338020.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    Related
    ENSAMIP00015031642.1, ENSAMIT00015043560.1

  2. XM_019482485.2 → XP_019338030.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

  3. XM_014594358.3 → XP_014449844.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    Related
    ENSAMIP00015031632.1, ENSAMIT00015043538.1
    Conserved Domains (1) summary
    pfam02485
    Location:134 → 402
    Branch; Core-2/I-Branching enzyme

  4. XM_019482480.2 → XP_019338025.1  beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 4

    Related
    ENSAMIP00015031637.1, ENSAMIT00015043553.1
Nucleotide Protein
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