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SLC11A1 solute carrier family 11 member 1 [ Alligator mississippiensis (American alligator) ]

Gene ID: 106736950, updated on 8-May-2024

Summary

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Gene symbol
SLC11A1
Gene description
solute carrier family 11 member 1
Locus tag
Y1Q_0014302
See related
EnsemblRapid:ENSAMIG00015002503
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See SLC11A1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 4 NC_081827.1 (253699476..253705885)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017711997.1 (34783..40712)

Chromosome 4 - NC_081827.1Genomic Context describing neighboring genes Neighboring gene probable hydrolase PNKD Neighboring gene ciliogenesis associated TTC17 interacting protein Neighboring gene uncharacterized LOC132250423 Neighboring gene CTD small phosphatase 1 Neighboring gene villin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadmium ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables iron ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables manganese ion transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in metal ion transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
natural resistance-associated macrophage protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081827.1 Reference rAllMis1 Primary Assembly

    Range
    253699476..253705885
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_059727519.1 → XP_059583502.1  natural resistance-associated macrophage protein 1 isoform X1

  2. XM_006261502.4 → XP_006261564.2  natural resistance-associated macrophage protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A151MYL6
    Related
    ENSAMIP00015003060.1, ENSAMIT00015004402.1
    Conserved Domains (2) summary
    TIGR01197
    Location:59 → 459
    nramp; NRAMP (natural resistance-associated macrophage protein) metal ion transporters
    pfam01566
    Location:81 → 465
    Nramp; Natural resistance-associated macrophage protein
Nucleotide Protein
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