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NDST4 N-deacetylase and N-sulfotransferase 4 [ Alligator mississippiensis (American alligator) ]

Gene ID: 106736621, updated on 8-May-2024

Summary

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Gene symbol
NDST4
Gene description
N-deacetylase and N-sulfotransferase 4
Locus tag
Y1Q_0001241
See related
EnsemblRapid:ENSAMIG00015000731
Gene type
protein coding
RefSeq status
MODEL
Organism
Alligator mississippiensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae; Alligator
Orthologs
human mouse all
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Genomic context

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See NDST4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2023_09 current rAllMis1 (GCF_030867095.1) 2 NC_081825.1 (123998384..124180510)
102 previous assembly ASM28112v4 (GCF_000281125.3) Unplaced Scaffold NW_017707836.1 (12973158..13151407)

Chromosome 2 - NC_081825.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC132248358 Neighboring gene uncharacterized LOC106739270 Neighboring gene uncharacterized LOC102575854 Neighboring gene UDP glycosyltransferase 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030867095.1-RS_2023_09

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference rAllMis1 Primary Assembly

Genomic

  1. NC_081825.1 Reference rAllMis1 Primary Assembly

    Range
    123998384..124180510
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006269625.3 → XP_006269687.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 4

    UniProtKB/TrEMBL
    A0A151PEC5
    Related
    ENSAMIP00015000406.1, ENSAMIT00015000962.1
    Conserved Domains (2) summary
    pfam00685
    Location:595 → 846
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:20 → 506
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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