U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106709439 irregular chiasm C-roughest protein-like [ Papilio machaon (common yellow swallowtail) ]

Gene ID: 106709439, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC106709439
Gene description
irregular chiasm C-roughest protein-like
See related
EnsemblRapid:ENSPNHG00000015680
Gene type
protein coding
RefSeq status
MODEL
Organism
Papilio machaon
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Papilionoidea; Papilionidae; Papilioninae; Papilio
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC106709439 in Genome Data Viewer
Location:
chromosome: 27
Exon count:
21
Annotation release Status Assembly Chr Location
101 current ilPapMach1.1 (GCF_912999745.1) 27 NC_060012.1 (3045099..3085767, complement)
100 previous assembly Pap_ma_1.0 (GCF_001298355.1) Unplaced Scaffold NW_014504820.1 (402194..431942)

Chromosome 27 - NC_060012.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106714265 Neighboring gene transposon Tf2-1 polyprotein Neighboring gene uncharacterized LOC106709437 Neighboring gene uncharacterized LOC106709426 Neighboring gene uncharacterized LOC123722541 Neighboring gene E3 ubiquitin-protein ligase CBL

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
irregular chiasm C-roughest protein-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Papilio machaon Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ilPapMach1.1

Genomic

  1. NC_060012.1 Reference ilPapMach1.1

    Range
    3045099..3085767 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045684627.1 → XP_045540583.1  irregular chiasm C-roughest protein-like isoform X1

    Related
    ENSPNHP00000017602.1, ENSPNHT00000029054.1

  2. XM_045684628.1 → XP_045540584.1  irregular chiasm C-roughest protein-like isoform X2

  3. XM_045684626.1 → XP_045540582.1  irregular chiasm C-roughest protein-like isoform X1

  4. XM_045684629.1 → XP_045540585.1  irregular chiasm C-roughest protein-like isoform X3

    Related
    ENSPNHP00000017603.1, ENSPNHT00000029055.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases