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kirrel1b kirre like nephrin family adhesion molecule 1b [ Xiphophorus maculatus (southern platyfish) ]

Gene ID: 106700167, updated on 13-Mar-2024

Summary

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Gene symbol
kirrel1b
Gene description
kirre like nephrin family adhesion molecule 1b
See related
Ensembl:ENSXMAG00000005665
Gene type
protein coding
RefSeq status
MODEL
Organism
Xiphophorus maculatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Xiphophorus
Orthologs
zebrafish all
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Genomic context

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See kirrel1b in Genome Data Viewer
Location:
chromosome: 6
Exon count:
15
Annotation release Status Assembly Chr Location
102 current X_maculatus-5.0-male (GCF_002775205.1) 6 NC_036448.1 (24623090..24737983, complement)
101 previous assembly Xiphophorus_maculatus-4.4.2 (GCF_000241075.1) Unplaced Scaffold NW_005372189.1 (676463..701026, complement)

Chromosome 6 - NC_036448.1Genomic Context describing neighboring genes Neighboring gene SLAM family member 6-like Neighboring gene uncharacterized LOC111608979 Neighboring gene cell adhesion molecule 3 Neighboring gene transfer RNA arginine (anticodon UCU)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xiphophorus maculatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference X_maculatus-5.0-male Primary Assembly

Genomic

  1. NC_036448.1 Reference X_maculatus-5.0-male Primary Assembly

    Range
    24623090..24737983 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023335626.1 → XP_023191394.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A3B5QIP1, M3ZTZ3
    Related
    ENSXMAP00000030120.1, ENSXMAT00000031703.1
    Conserved Domains (6) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:25 → 114
    IG_like; Immunoglobulin like
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain
    cl25800
    Location:587 → 747
    GGN; Gametogenetin
    cl28434
    Location:221 → 302
    I-set; Immunoglobulin I-set domain

  2. XM_023335625.1 → XP_023191393.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    M3ZTZ3
    Conserved Domains (6) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00410
    Location:25 → 114
    IG_like; Immunoglobulin like
    pfam13927
    Location:306 → 371
    Ig_3; Immunoglobulin domain
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain
    cl25800
    Location:570 → 759
    GGN; Gametogenetin
    cl28434
    Location:221 → 302
    I-set; Immunoglobulin I-set domain
Nucleotide Protein Strain
Heading Accession and Version

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