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Hcf Host cell factor [ Halyomorpha halys (brown marmorated stink bug) ]

Gene ID: 106685056, updated on 2-Aug-2024

Summary

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Gene symbol
Hcf
Gene description
Host cell factor
See related
EnsemblRapid:LOC106685056
Gene type
protein coding
RefSeq status
MODEL
Organism
Halyomorpha halys
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Hemiptera; Heteroptera; Panheteroptera; Pentatomomorpha; Pentatomoidea; Pentatomidae; Pentatominae; Halyomorpha
Orthologs
fruit fly all
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Genomic context

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See Hcf in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_07 current Hhal_1.1 (GCF_000696795.3) Unplaced Scaffold NW_027108478.1 (406118..455339)
100 previous assembly Hhal_1.0 (GCF_000696795.1) Unplaced Scaffold NW_014467070.1 (406119..455586)

NW_027108478.1Genomic Context describing neighboring genes Neighboring gene clathrin light chain Neighboring gene large ribosomal subunit protein uL24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rapid transcriptome sequencing of an invasive pest, the brown marmorated stink bug Halyomorpha halys. Ioannidis P, et al. BMC Genomics, 2014 Aug 29. PMID 25168586, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
host cell factor 2
Names
host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_000696795.3-RS_2024_07

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Hhal_1.1 Primary Assembly

Genomic

  1. NW_027108478.1 Reference Hhal_1.1 Primary Assembly

    Range
    406118..455339
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014427533.3 → XP_014283019.1  host cell factor 2 isoform X1

    Related
    XP_014283019.1
    Conserved Domains (8) summary
    PLN02153
    Location:3 → 326
    PLN02153; epithiospecifier protein
    COG3266
    Location:450 → 662
    DamX; Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning]
    cd00063
    Location:1043 → 1139
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:194 → 244
    Kelch; KELCH repeat [structural motif]
    pfam01344
    Location:21 → 58
    Kelch_1; Kelch motif
    pfam13415
    Location:208 → 256
    Kelch_3; Galactose oxidase, central domain
    pfam13854
    Location:312 → 348
    Kelch_5; Kelch motif
    cl00281
    Location:809 → 878
    metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...

  2. XM_024360219.2 → XP_024215987.1  host cell factor 2 isoform X2

    Related
    XP_024215987.1
    Conserved Domains (6) summary
    cd00063
    Location:1041 → 1137
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:194 → 244
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:312 → 344
    Kelch_5; Kelch motif
    cl00281
    Location:807 → 876
    metallo-dependent_hydrolases; Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a ...
    cl25750
    Location:448 → 660
    DamX; Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain [Cell cycle control, cell division, chromosome partitioning]
    cl26061
    Location:3 → 326
    PLN02193; nitrile-specifier protein
Nucleotide Protein
Heading Accession and Version

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