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LOC106650500 chondroitin sulfate N-acetylgalactosaminyltransferase 1 [ Trichogramma pretiosum ]

Gene ID: 106650500, updated on 22-Oct-2023

Summary

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Gene symbol
LOC106650500
Gene description
chondroitin sulfate N-acetylgalactosaminyltransferase 1
See related
EnsemblRapid:LOC106650500
Gene type
protein coding
RefSeq status
MODEL
Organism
Trichogramma pretiosum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Proctotrupomorpha; Chalcidoidea; Trichogrammatidae; Trichogramma
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Genomic context

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See LOC106650500 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
14
Annotation release Status Assembly Chr Location
101 current Tpre_2.0 (GCF_000599845.2) Unplaced Scaffold NW_019641637.1 (423332..488157)
100 previous assembly Tpre_1.0 (GCF_000599845.1) Unplaced Scaffold NW_014334614.1 (7216181..7265677)

NW_019641637.1Genomic Context describing neighboring genes Neighboring gene 5-phosphohydroxy-L-lysine phospho-lyase Neighboring gene UDP-glucuronosyltransferase 2B17-like Neighboring gene uncharacterized LOC106651411 Neighboring gene uncharacterized LOC106650993

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate N-acetylgalactosaminyltransferase 1; uncharacterized protein LOC106650500
Names
eukaryotic translation initiation factor 3 subunit A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Trichogramma pretiosum Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Tpre_2.0

Genomic

  1. NW_019641637.1 Reference Tpre_2.0

    Range
    423332..488157
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023459365.1 → XP_023315133.1  uncharacterized protein LOC106650500 isoform X1

    Related
    XP_023315133.1, XM_023459365.1
    Conserved Domains (1) summary
    cl11394
    Location:81 → 505
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_023459367.1 → XP_023315135.1  uncharacterized protein LOC106650500 isoform X2

    Related
    XP_023315135.1, XM_023459367.1
    Conserved Domains (1) summary
    cl11394
    Location:64 → 488
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_023459366.1 → XP_023315134.1  uncharacterized protein LOC106650500 isoform X1

    Related
    XP_023315134.1, XM_023459366.1
    Conserved Domains (1) summary
    cl11394
    Location:81 → 505
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  4. XM_014368532.2 → XP_014224018.1  chondroitin sulfate N-acetylgalactosaminyltransferase 1 isoform X3

    Related
    XP_014224018.1, XM_014368532.2
    Conserved Domains (1) summary
    cl11394
    Location:81 → 537
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein Strain
Heading Accession and Version

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