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SNORA98 small nucleolar RNA, H/ACA box 98 [ Homo sapiens (human) ]

Gene ID: 106635530, updated on 10-Oct-2023

Summary

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Official Symbol
SNORA98provided by HGNC
Official Full Name
small nucleolar RNA, H/ACA box 98provided by HGNC
Primary source
HGNC:HGNC:50402
See related
AllianceGenome:HGNC:50402
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
6q24.2
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (144405655..144405767)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (145598270..145598382)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (144726791..144726903)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901418 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25215 Neighboring gene Sharpr-MPRA regulatory region 1397 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:144647748-144648492 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:144651868-144653067 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25216 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25217 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25218 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:144666170-144666670 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:144666671-144667171 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25219 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25220 Neighboring gene Sharpr-MPRA regulatory region 7657 Neighboring gene rhomboid domain containing 1 pseudogene Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90719 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_90731 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:144754756-144755258 Neighboring gene utrophin Neighboring gene ReSE screen-validated silencer GRCh37_chr6:144780729-144780932 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25221 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr6:144790768-144791444 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:144794141-144795340 Neighboring gene Sharpr-MPRA regulatory region 2668 Neighboring gene Sharpr-MPRA regulatory region 10150 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25222 Neighboring gene NANOG hESC enhancer GRCh37_chr6:145107948-145108449 Neighboring gene Sharpr-MPRA regulatory region 9645 Neighboring gene MPRA-validated peak6190 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr6:145134839-145135340 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:145190998-145191517 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr6:145218575-145219774 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:145272790-145273457 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:145275769-145276268 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:145298093-145298720 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:145327891-145328441 Neighboring gene NANOG hESC enhancer GRCh37_chr6:145424274-145424879 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:145456814-145458013 Neighboring gene tRNA-Gln (anticodon TTG) 4-1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25223 Neighboring gene EPM2A glucan phosphatase, laforin Neighboring gene RNA, U1 small nuclear 33, pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies. Machyna M, et al. Mol Cell, 2014 Nov 6. PMID 25514182

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132778.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL590704

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    144405655..144405767
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    145598270..145598382
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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