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SNORD128 small nucleolar RNA, C/D box 128 [ Homo sapiens (human) ]

Gene ID: 106632271, updated on 10-Oct-2023

Summary

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Official Symbol
SNORD128provided by HGNC
Official Full Name
small nucleolar RNA, C/D box 128provided by HGNC
Primary source
HGNC:HGNC:50409
See related
AllianceGenome:HGNC:50409
Gene type
snoRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZL43
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Genomic context

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Location:
1p36.23
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (8494800..8494913, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (8027672..8027785, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (8554860..8554973, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 194 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:8402936-8403676 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8409923-8410743 Neighboring gene solute carrier family 45 member 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8419297-8419798 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8419799-8420298 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8424721-8425691 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:8427517-8428017 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:8429621-8430609 Neighboring gene Sharpr-MPRA regulatory region 599 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 102 Neighboring gene arginine-glutamic acid dipeptide repeats Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 195 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 196 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 103 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:8509073-8509572 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:8510477-8510976 Neighboring gene RERE antisense RNA 1 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:8519688-8520585 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:8562545-8563228 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:8564373-8565281 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8569526-8570026 Neighboring gene small nucleolar RNA SNORA77 Neighboring gene Sharpr-MPRA regulatory region 8357 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8658491-8658990 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 105 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 106 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 107 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 197 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 108 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 109 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 198 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8750738-8751238 Neighboring gene Sharpr-MPRA regulatory region 13529 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 199 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 200 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8770382-8770882 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:8781158-8781398 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:8790471-8790970 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:8791953-8792122 Neighboring gene ribosomal protein L7 pseudogene 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing. Kishore S, et al. Genome Biol, 2013 May 26. PMID 23706177, Free PMC Article
  2. The coilin interactome identifies hundreds of small noncoding RNAs that traffic through Cajal bodies. Machyna M, et al. Mol Cell, 2014 Nov 6. PMID 25514182

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_132752.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL096855

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    8494800..8494913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    8027672..8027785 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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