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GCNT2 glucosaminyl (N-acetyl) transferase 2 (I blood group) [ Geospiza fortis (medium ground-finch) ]

Gene ID: 106631903, updated on 3-Aug-2024

Summary

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Gene symbol
GCNT2
Gene description
glucosaminyl (N-acetyl) transferase 2 (I blood group)
Gene type
protein coding
RefSeq status
MODEL
Organism
Geospiza fortis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Thraupidae; Geospiza
Orthologs
human mouse all
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Genomic context

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See GCNT2 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
102 current GeoFor_1.0 (GCF_000277835.1) Unplaced Scaffold NW_005054376.1 (3036437..3040297)

NW_005054376.1Genomic Context describing neighboring genes Neighboring gene orofacial cleft 1 candidate 1 Neighboring gene transcription factor AP-2 alpha Neighboring gene transmembrane protein 14C-like Neighboring gene male germ cell associated kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005054376 Unplaced Scaffold Reference GeoFor_1.0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase
Names
glucosaminyl (N-acetyl) transferase 2, I-branching enzyme (I blood group)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Geospiza fortis Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GeoFor_1.0

Genomic

  1. NW_005054376.1 Reference GeoFor_1.0

    Range
    3036437..3040297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031060227.1 → XP_030916087.1  LOW QUALITY PROTEIN: N-acetyllactosaminide beta-1,6-N-acetylglucosaminyl-transferase

    UniProtKB/TrEMBL
    A0A8N5HU01
    Conserved Domains (1) summary
    cl27418
    Location:122 → 304
    Branch; Core-2/I-Branching enzyme
Nucleotide Protein
Heading Accession and Version

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