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LOC106627812 aspartyl/asparaginyl beta-hydroxylase [ Bactrocera oleae (olive fruit fly) ]

Gene ID: 106627812, updated on 10-May-2024

Summary

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Gene symbol
LOC106627812
Gene description
aspartyl/asparaginyl beta-hydroxylase
Gene type
protein coding
RefSeq status
MODEL
Organism
Bactrocera oleae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Bactrocera; Daculus
Orthologs
fruit fly all
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Genomic context

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See LOC106627812 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current MU_Boleae_v2 (GCF_001188975.3) Unplaced Scaffold NW_021667473.1 (235469..257700)
100 previous assembly gapfilled_joined_lt9474.gt500.covgt10 (GCF_001188975.1) Unplaced Scaffold NW_013581226.1 (1741910..1762106, complement)

NW_021667473.1Genomic Context describing neighboring genes Neighboring gene microtubule-associated protein RP/EB family member 1 Neighboring gene CDGSH iron-sulfur domain-containing protein 3, mitochondrial Neighboring gene uncharacterized LOC106627843 Neighboring gene uncharacterized LOC118682202 Neighboring gene cholinesterase 1-like Neighboring gene uncharacterized LOC106627853

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Analysis of the Olive Fruit Fly Bactrocera oleae Transcriptome and Phylogenetic Classification of the Major Detoxification Gene Families. Pavlidi N, et al. PLoS One, 2013. PMID 23824998, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptidyl-aspartic acid 3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-aspartic acid hydroxylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aspartyl/asparaginyl beta-hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Bactrocera oleae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU_Boleae_v2 Primary Assembly

Genomic

  1. NW_021667473.1 Reference MU_Boleae_v2 Primary Assembly

    Range
    235469..257700
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036369867.1 → XP_036225760.1  aspartyl/asparaginyl beta-hydroxylase isoform X1

    Conserved Domains (3) summary
    COG0457
    Location:795 → 1063
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:896 → 924
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:1035 → 1187
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  2. XM_036369871.1 → XP_036225764.1  aspartyl/asparaginyl beta-hydroxylase isoform X5

    Conserved Domains (3) summary
    COG0457
    Location:769 → 1037
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:870 → 898
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:1009 → 1161
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  3. XM_036369868.1 → XP_036225761.1  aspartyl/asparaginyl beta-hydroxylase isoform X2

    Conserved Domains (3) summary
    COG0457
    Location:791 → 1059
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:892 → 920
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:1031 → 1183
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  4. XM_036369869.1 → XP_036225762.1  aspartyl/asparaginyl beta-hydroxylase isoform X3

    Conserved Domains (3) summary
    COG0457
    Location:775 → 1043
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:876 → 904
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:1015 → 1167
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase

  5. XM_036369870.1 → XP_036225763.1  aspartyl/asparaginyl beta-hydroxylase isoform X4

    Conserved Domains (3) summary
    COG0457
    Location:771 → 1039
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:872 → 900
    TPR; TPR repeat [structural motif]
    pfam05118
    Location:1011 → 1163
    Asp_Arg_Hydrox; Aspartyl/Asparaginyl beta-hydroxylase
Nucleotide Protein
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