U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LSm3 U6 snRNA-associated Sm-like protein LSm3 [ Bactrocera oleae (olive fruit fly) ]

Gene ID: 106617704, updated on 15-May-2024

Summary

Go to the top of the page Help
Gene symbol
LSm3
Gene description
U6 snRNA-associated Sm-like protein LSm3
Gene type
protein coding
RefSeq status
MODEL
Organism
Bactrocera oleae
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Tephritoidea; Tephritidae; Bactrocera; Daculus
Orthologs
fruit fly all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LSm3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
101 current MU_Boleae_v2 (GCF_001188975.3) Unplaced Scaffold NW_021648870.1 (8473824..8475925)
100 previous assembly gapfilled_joined_lt9474.gt500.covgt10 (GCF_001188975.1) Unplaced Scaffold NW_013581308.1 (393920..394787)

NW_021648870.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC118679891 Neighboring gene uncharacterized LOC106617718 Neighboring gene uncharacterized LOC118679894 Neighboring gene uncharacterized LOC118679892 Neighboring gene UPF0692 protein CG33108 Neighboring gene phosphofurin acidic cluster sorting protein KrT95D Neighboring gene uncharacterized LOC118679893 Neighboring gene salivary gland-expressed bHLH

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Analysis of the Olive Fruit Fly Bactrocera oleae Transcriptome and Phylogenetic Classification of the Major Detoxification Gene Families. Pavlidi N, et al. PLoS One, 2013. PMID 23824998, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in P-body assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Lsm1-7-Pat1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U6 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
U6 snRNA-associated Sm-like protein LSm3

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Bactrocera oleae Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference MU_Boleae_v2 Primary Assembly

Genomic

  1. NW_021648870.1 Reference MU_Boleae_v2 Primary Assembly

    Range
    8473824..8475925
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014235073.2 → XP_014090548.1  U6 snRNA-associated Sm-like protein LSm3

    Conserved Domains (1) summary
    cd01730
    Location:15 → 96
    LSm3; Like-Sm protein 3

  2. XM_036357384.1 → XP_036213277.1  U6 snRNA-associated Sm-like protein LSm3

    Conserved Domains (1) summary
    cd01730
    Location:15 → 96
    LSm3; Like-Sm protein 3

  3. XM_036357385.1 → XP_036213278.1  U6 snRNA-associated Sm-like protein LSm3

    Conserved Domains (1) summary
    cd01730
    Location:15 → 96
    LSm3; Like-Sm protein 3

  4. XM_036357383.1 → XP_036213276.1  U6 snRNA-associated Sm-like protein LSm3

    Conserved Domains (1) summary
    cd01730
    Location:15 → 96
    LSm3; Like-Sm protein 3
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.