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LOC106610540 heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106610540, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106610540
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like
See related
Ensembl:ENSSSAG00000084886
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106610540 in Genome Data Viewer
Location:
chromosome: ssa01
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa01 NC_059442.1 (94079612..94133735, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa01 NC_027300.1 (79959548..80013705, complement)

Chromosome ssa01 - NC_059442.1Genomic Context describing neighboring genes Neighboring gene peripheral myelin protein 22 Neighboring gene tektin-3-like Neighboring gene heparan sulfate glucosamine 3-O-sulfotransferase 3A1 Neighboring gene transfer RNA glycine (anticodon CCC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059442.1 Reference Ssal_v3.1

    Range
    94079612..94133735 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014209931.2 → XP_014065406.1  heparan sulfate glucosamine 3-O-sulfotransferase 3B1-like

    UniProtKB/TrEMBL
    A0A1S3SM62
    Related
    ENSSSAP00000137431.1, ENSSSAT00000202283.1
    Conserved Domains (1) summary
    pfam00685
    Location:149 → 390
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases