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LOC106609192 conserved oligomeric Golgi complex subunit 5-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106609192, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106609192
Gene description
conserved oligomeric Golgi complex subunit 5-like
See related
Ensembl:ENSSSAG00000066381
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106609192 in Genome Data Viewer
Location:
chromosome: ssa07
Exon count:
22
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa07 NC_059448.1 (40205515..40306116, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa07 NC_027306.1 (36420085..36521114, complement)

Chromosome ssa07 - NC_059448.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box protein 15-like Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 Neighboring gene G-protein coupled receptor 22-like Neighboring gene uncharacterized LOC106609196 Neighboring gene B-cell receptor-associated protein 29

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Extensive local gene duplication and functional divergence among paralogs in Atlantic salmon. Warren IA, et al. Genome Biol Evol, 2014 Jun 19. PMID 24951567, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
conserved oligomeric Golgi complex subunit 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059448.1 Reference Ssal_v3.1

    Range
    40205515..40306116 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014207707.2 → XP_014063182.1  conserved oligomeric Golgi complex subunit 5-like

    UniProtKB/TrEMBL
    A0A1S3SFR7
    Related
    ENSSSAP00000079240.2, ENSSSAT00000112841.2
    Conserved Domains (1) summary
    pfam10392
    Location:20 → 142
    COG5; Golgi transport complex subunit 5
Nucleotide Protein
Heading Accession and Version

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