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LOC106605235 beta-1,4-galactosyltransferase 3 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106605235, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106605235
Gene description
beta-1,4-galactosyltransferase 3
See related
Ensembl:ENSSSAG00000090099
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106605235 in Genome Data Viewer
Location:
chromosome: ssa05
Exon count:
6
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa05 NC_059446.1 (56577995..56587214, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa05 NC_027304.1 (53958286..53966702, complement)

Chromosome ssa05 - NC_059446.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase Nek8-like Neighboring gene serine/threonine-protein kinase Nek8-like Neighboring gene 26S proteasome regulatory subunit 6B Neighboring gene sodium channel subunit beta-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4-galactosyltransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059446.1 Reference Ssal_v3.1

    Range
    56577995..56587214 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014200658.2 → XP_014056133.1  beta-1,4-galactosyltransferase 3

    UniProtKB/TrEMBL
    A0A1S3RV21
    Related
    ENSSSAP00000140439.1, ENSSSAT00000186135.1
    Conserved Domains (1) summary
    cd00899
    Location:132 → 350
    b4GalT; Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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