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LOC106604920 heparan sulfate glucosamine 3-O-sulfotransferase 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106604920, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106604920
Gene description
heparan sulfate glucosamine 3-O-sulfotransferase 1
See related
Ensembl:ENSSSAG00000093236
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106604920 in Genome Data Viewer
Location:
chromosome: ssa01
Exon count:
2
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa01 NC_059442.1 (53428737..53497162)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa01 NC_027300.1 (50646134..50714013)

Chromosome ssa01 - NC_059442.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 518A Neighboring gene B-cell linker Neighboring gene DNA nucleotidylexotransferase Neighboring gene uncharacterized LOC106605336 Neighboring gene homeobox protein vent1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine 3-sulfotransferase 1 activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan sulfate glucosamine 3-O-sulfotransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059442.1 Reference Ssal_v3.1

    Range
    53428737..53497162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014200059.2 → XP_014055534.1  heparan sulfate glucosamine 3-O-sulfotransferase 1

    UniProtKB/TrEMBL
    A0A1S3RUX6
    Related
    ENSSSAP00000179589.1, ENSSSAT00000209037.1
    Conserved Domains (1) summary
    pfam00685
    Location:49 → 268
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases