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LOC106603494 polypeptide N-acetylgalactosaminyltransferase 10 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106603494, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106603494
Gene description
polypeptide N-acetylgalactosaminyltransferase 10
See related
Ensembl:ENSSSAG00000058387
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106603494 in Genome Data Viewer
Location:
chromosome: ssa04
Exon count:
12
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa04 NC_059445.1 (57643566..57761661, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa04 NC_027303.1 (52151554..52266865, complement)

Chromosome ssa04 - NC_059445.1Genomic Context describing neighboring genes Neighboring gene Flotillin-2a Neighboring gene dehydrogenase/reductase SDR family member 11 Neighboring gene uncharacterized LOC106603493 Neighboring gene protein FAM114A2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059445.1 Reference Ssal_v3.1

    Range
    57643566..57761661 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014197263.2 → XP_014052738.1  polypeptide N-acetylgalactosaminyltransferase 10

    UniProtKB/TrEMBL
    A0A1S3RKG8, A0A1S3RLY9
    Related
    ENSSSAP00000066985.2, ENSSSAT00000098403.2
    Conserved Domains (3) summary
    cd02510
    Location:149 → 444
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:462 → 590
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:460 → 588
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
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Gene LinkOut

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