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LOC106603489 delta-sarcoglycan-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106603489, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106603489
Gene description
delta-sarcoglycan-like
See related
Ensembl:ENSSSAG00000005871
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106603489 in Genome Data Viewer
Location:
chromosome: ssa04
Exon count:
8
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa04 NC_059445.1 (58477430..58589395)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa04 NC_027303.1 (52979955..53088334)

Chromosome ssa04 - NC_059445.1Genomic Context describing neighboring genes Neighboring gene 39S ribosomal protein L22, mitochondrial Neighboring gene uncharacterized LOC106603609 Neighboring gene rho GTPase-activating protein 7-like Neighboring gene Arginyl-tRNA synthetase, cytoplasmic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
delta-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059445.1 Reference Ssal_v3.1

    Range
    58477430..58589395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014197253.2 → XP_014052728.1  delta-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A1S3RKF9
    Conserved Domains (1) summary
    pfam04790
    Location:27 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein

  2. XM_014197254.2 → XP_014052729.1  delta-sarcoglycan-like

    UniProtKB/TrEMBL
    A0A1S3RKF9
    Related
    ENSSSAP00000158444.1, ENSSSAT00000207419.1
    Conserved Domains (1) summary
    pfam04790
    Location:27 → 277
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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