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LOC106600851 beta-1,4 N-acetylgalactosaminyltransferase 1-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106600851, updated on 10-Oct-2024

Summary

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Gene symbol
LOC106600851
Gene description
beta-1,4 N-acetylgalactosaminyltransferase 1-like
See related
Ensembl:ENSSSAG00000089054
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106600851 in Genome Data Viewer
Location:
chromosome: ssa03
Exon count:
11
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa03 NC_059444.1 (57208045..57228854, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa03 NC_027302.1 (56860156..56899972, complement)

Chromosome ssa03 - NC_059444.1Genomic Context describing neighboring genes Neighboring gene collagen alpha-1(I) chain Neighboring gene guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-T2-like Neighboring gene pyruvate dehydrogenase (acetyl-transferring) kinase isozyme 2, mitochondrial Neighboring gene TANK-binding kinase 1-binding protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in UDP-N-acetylgalactosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in UDP-N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,4 N-acetylgalactosaminyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059444.1 Reference Ssal_v3.1

    Range
    57208045..57228854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045714996.1 → XP_045570952.1  beta-1,4 N-acetylgalactosaminyltransferase 1-like

    UniProtKB/TrEMBL
    A0A1S3R885
    Related
    ENSSSAP00000134878.1, ENSSSAT00000205508.1
    Conserved Domains (1) summary
    cl11394
    Location:242 → 354
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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