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LOC106593699 globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106593699, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106593699
Gene description
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1
See related
Ensembl:ENSSSAG00000092071
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106593699 in Genome Data Viewer
Location:
chromosome: ssa11
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa11 NC_059452.1 (99522113..99587909)
100 previous assembly ICSASG_v2 (GCF_000233375.1) Unplaced Scaffold NW_012350760.1 (1158..9918, complement)

Chromosome ssa11 - NC_059452.1Genomic Context describing neighboring genes Neighboring gene zinc-binding protein A33-like Neighboring gene OVCA2 serine hydrolase domain containing Neighboring gene uncharacterized LOC123725205 Neighboring gene uncharacterized LOC106563764 Neighboring gene globoside alpha-1,3-N-acetylgalactosaminyltransferase 1-like Neighboring gene uncharacterized LOC106563766

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
globoside alpha-1,3-N-acetylgalactosaminyltransferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059452.1 Reference Ssal_v3.1

    Range
    99522113..99587909
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_045690174.1 → XP_045546130.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X1

  2. XM_045690175.1 → XP_045546131.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X2

    Related
    ENSSSAP00000177152.1, ENSSSAT00000219436.1

  3. XM_045690176.1 → XP_045546132.1  globoside alpha-1,3-N-acetylgalactosaminyltransferase 1 isoform X3

    Related
    ENSSSAP00000171488.1, ENSSSAT00000210729.1
Nucleotide Protein
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Gene LinkOut

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