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LOC106590625 carbohydrate sulfotransferase 2-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106590625, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106590625
Gene description
carbohydrate sulfotransferase 2-like
See related
Ensembl:ENSSSAG00000120699
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106590625 in Genome Data Viewer
Location:
chromosome: ssa29
Exon count:
1
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa29 NC_059470.1 (33552169..33554729, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa29 NC_027328.1 (33718418..33721349, complement)

Chromosome ssa29 - NC_059470.1Genomic Context describing neighboring genes Neighboring gene suppressor of cytokine signaling 6 Neighboring gene docking protein 6-like Neighboring gene procollagen C-endopeptidase enhancer 2-like Neighboring gene U2 snRNP-associated SURP motif-containing protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sulfur compound metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059470.1 Reference Ssal_v3.1

    Range
    33552169..33554729 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014181754.2 → XP_014037229.1  carbohydrate sulfotransferase 2-like

    UniProtKB/TrEMBL
    A0A1S3QCT7
    Related
    ENSSSAP00000176900.1, ENSSSAT00000232884.1
    Conserved Domains (1) summary
    cl21551
    Location:263 → 386
    Sulfotransfer_1; Sulfotransferase domain
Nucleotide Protein
Heading Accession and Version

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