U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106590617 beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [ Salmo salar (Atlantic salmon) ]

Gene ID: 106590617, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC106590617
Gene description
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase
See related
Ensembl:ENSSSAG00000001094
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC106590617 in Genome Data Viewer
Location:
chromosome: ssa02
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa02 NC_059443.1 (68200769..68267627)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa02 NC_027301.1 (57835629..57845734)

Chromosome ssa02 - NC_059443.1Genomic Context describing neighboring genes Neighboring gene amine sulfotransferase-like Neighboring gene TGF-beta activated kinase 1/MAP3K7 binding protein 1 Neighboring gene complement C1q tumor necrosis factor-related protein 1-like Neighboring gene transmembrane protease serine 6

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059443.1 Reference Ssal_v3.1

    Range
    68200769..68267627
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014181747.2 → XP_014037222.1  beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase

    UniProtKB/TrEMBL
    A0A1S3QBJ3
    Related
    ENSSSAP00000152458.1, ENSSSAT00000239240.1
    Conserved Domains (1) summary
    pfam04724
    Location:315 → 624
    Glyco_transf_17; Glycosyltransferase family 17
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases