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LOC106590430 polypeptide N-acetylgalactosaminyltransferase 11-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106590430, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106590430
Gene description
polypeptide N-acetylgalactosaminyltransferase 11-like
See related
Ensembl:ENSSSAG00000073804
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106590430 in Genome Data Viewer
Location:
chromosome: ssa29
Exon count:
14
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa29 NC_059470.1 (23575004..23639745)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa29 NC_027328.1 (23603758..23663966)

Chromosome ssa29 - NC_059470.1Genomic Context describing neighboring genes Neighboring gene apoptosis regulator Bcl-2-like Neighboring gene 5'-AMP-activated protein kinase subunit gamma-1 Neighboring gene complement C1q-like protein 4 Neighboring gene histone-lysine N-methyltransferase 2C Neighboring gene DNA repair protein XRCC2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Notch binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059470.1 Reference Ssal_v3.1

    Range
    23575004..23639745
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014181465.2 → XP_014036940.1  polypeptide N-acetylgalactosaminyltransferase 11-like

    UniProtKB/TrEMBL
    A0A1S3QAN9
    Conserved Domains (4) summary
    cd02510
    Location:142 → 440
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:471 → 592
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:471 → 592
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:142 → 370
    Glyco_tranf_2_3; Glycosyltransferase like family 2

  2. XM_014181464.2 → XP_014036939.1  polypeptide N-acetylgalactosaminyltransferase 11-like

    UniProtKB/TrEMBL
    A0A1S3QAN9
    Related
    ENSSSAP00000098960.2, ENSSSAT00000133422.2
    Conserved Domains (4) summary
    cd02510
    Location:142 → 440
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:471 → 592
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:471 → 592
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:142 → 370
    Glyco_tranf_2_3; Glycosyltransferase like family 2

  3. XM_014181466.2 → XP_014036941.1  polypeptide N-acetylgalactosaminyltransferase 11-like

    UniProtKB/TrEMBL
    A0A1S3QAN9
    Conserved Domains (4) summary
    cd02510
    Location:142 → 440
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:471 → 592
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:471 → 592
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:142 → 370
    Glyco_tranf_2_3; Glycosyltransferase like family 2

  4. XM_014181468.2 → XP_014036943.1  polypeptide N-acetylgalactosaminyltransferase 11-like

    UniProtKB/TrEMBL
    A0A1S3QAN9
    Related
    ENSSSAP00000116081.1, ENSSSAT00000151256.2
    Conserved Domains (4) summary
    cd02510
    Location:142 → 440
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:471 → 592
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:471 → 592
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
    pfam13641
    Location:142 → 370
    Glyco_tranf_2_3; Glycosyltransferase like family 2
Nucleotide Protein
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