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LOC106589898 alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106589898, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106589898
Gene description
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like
See related
Ensembl:ENSSSAG00000066983
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106589898 in Genome Data Viewer
Location:
chromosome: ssa28
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa28 NC_059469.1 (32251718..32267347, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa28 NC_027327.1 (30838401..30854224, complement)

Chromosome ssa28 - NC_059469.1Genomic Context describing neighboring genes Neighboring gene brain-specific angiogenesis inhibitor 1-associated protein 2-like Neighboring gene mucin-4-like Neighboring gene serine/threonine-protein kinase LMTK1 Neighboring gene tryptase Neighboring gene nuclear protein localization protein 4 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059469.1 Reference Ssal_v3.1

    Range
    32251718..32267347 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014180315.2 → XP_014035790.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like isoform X2

    UniProtKB/TrEMBL
    A0A1S3Q737
    Related
    ENSSSAP00000080001.1, ENSSSAT00000113653.2
    Conserved Domains (1) summary
    pfam00777
    Location:183 → 469
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_045710147.1 → XP_045566103.1  alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2-like isoform X1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases