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galnt2 UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106589660, updated on 13-Mar-2024

Summary

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Gene symbol
galnt2
Gene description
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
See related
Ensembl:ENSSSAG00000072464
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See galnt2 in Genome Data Viewer
Location:
chromosome: ssa28
Exon count:
16
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa28 NC_059469.1 (19925989..20020221)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa28 NC_027327.1 (19521894..19616298)

Chromosome ssa28 - NC_059469.1Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family B (MDR/TAP), member 10 Neighboring gene URB2 ribosome biogenesis homolog Neighboring gene piggyBac transposable element-derived protein 5-like Neighboring gene component of oligomeric golgi complex 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059469.1 Reference Ssal_v3.1

    Range
    19925989..20020221
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014179903.2 → XP_014035378.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A1S3Q5W8
    Related
    ENSSSAP00000094619.1, ENSSSAT00000128932.2
    Conserved Domains (3) summary
    cd02510
    Location:128 → 423
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:443 → 560
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:435 → 558
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain

  2. XM_014179904.2 → XP_014035379.1  polypeptide N-acetylgalactosaminyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A1S3Q7K3
    Related
    ENSSSAP00000163175.1, ENSSSAT00000166519.1
    Conserved Domains (3) summary
    cd02510
    Location:128 → 423
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:443 → 554
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
    pfam00652
    Location:435 → 552
    Ricin_B_lectin; Ricin-type beta-trefoil lectin domain
Nucleotide Protein
Heading Accession and Version

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