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LOC106588596 CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106588596, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106588596
Gene description
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like
See related
Ensembl:ENSSSAG00000042773
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106588596 in Genome Data Viewer
Location:
chromosome: ssa27
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa27 NC_059468.1 (16993009..17035900, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa27 NC_027326.1 (16510448..16554962, complement)

Chromosome ssa27 - NC_059468.1Genomic Context describing neighboring genes Neighboring gene uncharacterized aarF domain-containing protein kinase 5-like Neighboring gene cleavage and polyadenylation specificity factor subunit 1 Neighboring gene poly(ADP-ribose) polymerase family member 10 Neighboring gene CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1 Neighboring gene KH domain-containing, RNA-binding, signal transduction-associated protein 3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables beta-galactoside (CMP) alpha-2,3-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059468.1 Reference Ssal_v3.1

    Range
    16993009..17035900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014177753.2 → XP_014033228.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like

    UniProtKB/TrEMBL
    A0A1S3PZW7
    Related
    ENSSSAP00000036863.1, ENSSSAT00000062600.2
    Conserved Domains (1) summary
    pfam00777
    Location:79 → 332
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  2. XM_014177751.2 → XP_014033226.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like

    UniProtKB/TrEMBL
    A0A1S3PZW7
    Conserved Domains (1) summary
    pfam00777
    Location:79 → 332
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)

  3. XM_014177752.2 → XP_014033227.1  CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 1-like

    UniProtKB/TrEMBL
    A0A1S3PZW7
    Conserved Domains (1) summary
    pfam00777
    Location:79 → 332
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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