U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC106588202 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B [ Salmo salar (Atlantic salmon) ]

Gene ID: 106588202, updated on 30-Nov-2023

Summary

Go to the top of the page Help
Gene symbol
LOC106588202
Gene description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B
See related
Ensembl:ENSSSAG00000078086
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
STT3B
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC106588202 in Genome Data Viewer
Location:
chromosome: ssa27
Exon count:
17
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa27 NC_059468.1 (3160641..3271346)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa27 NC_027326.1 (2805539..2916283)

Chromosome ssa27 - NC_059468.1Genomic Context describing neighboring genes Neighboring gene RNA-binding motif, single-stranded-interacting protein 3 Neighboring gene TGF-beta receptor type-2-like Neighboring gene oxysterol-binding protein-related protein 10 Neighboring gene uncharacterized LOC106588205

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-diphosphooligosaccharide-protein glycotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-translational protein modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059468.1 Reference Ssal_v3.1

    Range
    3160641..3271346
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014176962.2 → XP_014032437.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B isoform X2

    UniProtKB/TrEMBL
    A0A1S3PXM6
    Related
    ENSSSAP00000110530.2, ENSSSAT00000145452.2
    Conserved Domains (1) summary
    pfam02516
    Location:53 → 545
    STT3; Oligosaccharyl transferase STT3 subunit

  2. XM_014176961.2 → XP_014032436.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B isoform X1

    UniProtKB/TrEMBL
    A0A1S3PXT2
    Related
    ENSSSAP00000158688.1, ENSSSAT00000232583.1
    Conserved Domains (1) summary
    pfam02516
    Location:53 → 545
    STT3; Oligosaccharyl transferase STT3 subunit
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.