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uggt2 UDP-glucose glycoprotein glucosyltransferase 2 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106586268, updated on 13-Mar-2024

Summary

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Gene symbol
uggt2
Gene description
UDP-glucose glycoprotein glucosyltransferase 2
See related
Ensembl:ENSSSAG00000081076
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See uggt2 in Genome Data Viewer
Location:
chromosome: ssa25
Exon count:
42
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa25 NC_059466.1 (16294134..16336563)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa25 NC_027324.1 (15945393..15987881)

Chromosome ssa25 - NC_059466.1Genomic Context describing neighboring genes Neighboring gene 2-oxoglutarate receptor 1 Neighboring gene heparan sulfate 6-O-sulfotransferase 3b Neighboring gene DnaJ (Hsp40) homolog, subfamily C, member 3a Neighboring gene claudin 10-like 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glucose:glycoprotein glucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables unfolded protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation via asparagine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucose:glycoprotein glucosyltransferase 1; UDP-glucose:glycoprotein glucosyltransferase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059466.1 Reference Ssal_v3.1

    Range
    16294134..16336563
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014173383.2 → XP_014028858.1  UDP-glucose:glycoprotein glucosyltransferase 2 isoform X1

    UniProtKB/TrEMBL
    A0A1S3PME0
    Related
    ENSSSAP00000119372.2, ENSSSAT00000154671.2
    Conserved Domains (3) summary
    cd06432
    Location:1266 → 1513
    GT8_HUGT1_C_like; The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family
    COG1442
    Location:1277 → 1472
    RfaJ; Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]
    pfam06427
    Location:32 → 1197
    UDP-g_GGTase; UDP-glucose:Glycoprotein Glucosyltransferase

  2. XM_014173384.2 → XP_014028859.1  UDP-glucose:glycoprotein glucosyltransferase 2 isoform X2

    UniProtKB/TrEMBL
    A0A1S3PNI0
    Related
    ENSSSAP00000119366.2, ENSSSAT00000154662.2
    Conserved Domains (2) summary
    cd06432
    Location:1246 → 1493
    GT8_HUGT1_C_like; The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family
    pfam06427
    Location:32 → 1197
    UDP-g_GGTase; UDP-glucose:Glycoprotein Glucosyltransferase

  3. XM_014173385.2 → XP_014028860.1  UDP-glucose:glycoprotein glucosyltransferase 1 isoform X3

    UniProtKB/TrEMBL
    A0A1S3PMF6
    Related
    ENSSSAP00000119276.2, ENSSSAT00000154568.2
    Conserved Domains (2) summary
    cd06432
    Location:1238 → 1485
    GT8_HUGT1_C_like; The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family
    pfam06427
    Location:32 → 1197
    UDP-g_GGTase; UDP-glucose:Glycoprotein Glucosyltransferase
Nucleotide Protein
Heading Accession and Version

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