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LOC106586150 chondroitin sulfate synthase 2-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106586150, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106586150
Gene description
chondroitin sulfate synthase 2-like
See related
Ensembl:ENSSSAG00000064412
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106586150 in Genome Data Viewer
Location:
chromosome: ssa25
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa25 NC_059466.1 (11007684..11026771, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa25 NC_027324.1 (10682419..10696108, complement)

Chromosome ssa25 - NC_059466.1Genomic Context describing neighboring genes Neighboring gene rac GTPase-activating protein 1 Neighboring gene acid-sensing ion channel 4-A-like Neighboring gene protein Wnt-6-like Neighboring gene protein Wnt-10a-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059466.1 Reference Ssal_v3.1

    Range
    11007684..11026771 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014173055.2 → XP_014028530.1  chondroitin sulfate synthase 2-like

    UniProtKB/TrEMBL
    A0A1S3NWG5, A0A1S3PLH9
    Related
    ENSSSAP00000073588.1, ENSSSAT00000106899.2
    Conserved Domains (1) summary
    pfam05679
    Location:249 → 750
    CHGN; Chondroitin N-acetylgalactosaminyltransferase
Nucleotide Protein
Heading Accession and Version

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