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LOC106585823 N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106585823, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106585823
Gene description
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2-like
See related
Ensembl:ENSSSAG00000105672
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106585823 in Genome Data Viewer
Location:
chromosome: ssa02
Exon count:
5
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa02 NC_059443.1 (52960086..52976235, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa02 NC_027301.1 (42317319..42332075, complement)

Chromosome ssa02 - NC_059443.1Genomic Context describing neighboring genes Neighboring gene homeobox protein OTX1 B-like Neighboring gene uncharacterized LOC106585830 Neighboring gene COMM domain-containing protein 1 Neighboring gene protocadherin Fat 4-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059443.1 Reference Ssal_v3.1

    Range
    52960086..52976235 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014172491.2 → XP_014027966.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2-like

    UniProtKB/TrEMBL
    A0A1S3PK38
    Related
    ENSSSAP00000160400.1, ENSSSAT00000254190.1
    Conserved Domains (1) summary
    cl21608
    Location:159 → 348
    Galactosyl_T; Galactosyltransferase

  2. XM_014172492.2 → XP_014027967.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2-like

    UniProtKB/TrEMBL
    A0A1S3PK38
    Related
    ENSSSAP00000158399.1, ENSSSAT00000188226.1
    Conserved Domains (1) summary
    cl21608
    Location:159 → 348
    Galactosyl_T; Galactosyltransferase

  3. XM_014172493.2 → XP_014027968.1  N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase 2-like

    UniProtKB/TrEMBL
    A0A1S3PK38
    Related
    ENSSSAP00000148883.1, ENSSSAT00000178059.1
    Conserved Domains (1) summary
    cl21608
    Location:159 → 348
    Galactosyl_T; Galactosyltransferase
Nucleotide Protein
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