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LOC106585731 sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106585731, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106585731
Gene description
sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase-like
See related
Ensembl:ENSSSAG00000116898
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106585731 in Genome Data Viewer
Location:
chromosome: ssa24
Exon count:
4
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa24 NC_059465.1 (27538413..27554354)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa24 NC_027323.1 (28875933..28889488)

Chromosome ssa24 - NC_059465.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain-containing protein 158-like Neighboring gene cyclin G2 Neighboring gene ras-related protein Rab-27B-like Neighboring gene uncharacterized LOC106585729 Neighboring gene polymerase (DNA directed) iota

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-glycan processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059465.1 Reference Ssal_v3.1

    Range
    27538413..27554354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014172291.2 → XP_014027766.1  sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase-like

    UniProtKB/TrEMBL
    A0A1S3PJJ4
    Related
    ENSSSAP00000162678.1, ENSSSAT00000233522.1
    Conserved Domains (1) summary
    pfam00777
    Location:108 → 369
    Glyco_transf_29; Glycosyltransferase family 29 (sialyltransferase)
Nucleotide Protein
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Gene LinkOut

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