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LOC106585549 probable cytosolic iron-sulfur protein assembly protein ciao1-B [ Salmo salar (Atlantic salmon) ]

Gene ID: 106585549, updated on 19-Jun-2024

Summary

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Gene symbol
LOC106585549
Gene description
probable cytosolic iron-sulfur protein assembly protein ciao1-B
See related
Ensembl:ENSSSAG00000080516
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
CIAO1; ciao1b
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Genomic context

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See LOC106585549 in Genome Data Viewer
Location:
chromosome: ssa24
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa24 NC_059465.1 (21469176..21475420)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa24 NC_027323.1 (21113534..21119625)

Chromosome ssa24 - NC_059465.1Genomic Context describing neighboring genes Neighboring gene protein turtle homolog A-like Neighboring gene coiled-coil domain-containing protein 74A-like Neighboring gene transmembrane protein 127 Neighboring gene U5 small nuclear ribonucleoprotein 200 kDa helicase Neighboring gene sodium-dependent phosphate transporter 1-A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Salmo salar and Esox lucius full-length cDNA sequences reveal changes in evolutionary pressures on a post-tetraploidization genome. Leong JS, et al. BMC Genomics, 2010 Apr 30. PMID 20433749, Free PMC Article
  2. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in iron-sulfur cluster assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic [4Fe-4S] assembly targeting complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable cytosolic iron-sulfur protein assembly protein ciao1-B
Names
WD repeat-containing protein 39-B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059465.1 Reference Ssal_v3.1

    Range
    21469176..21475420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014171892.2 → XP_014027367.2  probable cytosolic iron-sulfur protein assembly protein ciao1-B isoform X1

    Related
    ENSSSAP00000117557.2, ENSSSAT00000152780.2

  2. XM_014171893.2 → XP_014027368.2  probable cytosolic iron-sulfur protein assembly protein ciao1-B isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
B5X212.1 GenPept UniProtKB/Swiss-Prot:B5X212

Gene LinkOut

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