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LOC106585136 VIP36-like protein [ Salmo salar (Atlantic salmon) ]

Gene ID: 106585136, updated on 19-Jun-2024

Summary

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Gene symbol
LOC106585136
Gene description
VIP36-like protein
See related
Ensembl:ENSSSAG00000071456
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: ssa24
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa24 NC_059465.1 (8874564..8880529, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa24 NC_027323.1 (8713242..8720185, complement)

Chromosome ssa24 - NC_059465.1Genomic Context describing neighboring genes Neighboring gene leukocyte surface antigen CD53-like Neighboring gene Leukocyte surface antigen CD53 Neighboring gene T-box transcription factor TBX3-like Neighboring gene TM2 domain-containing protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059465.1 Reference Ssal_v3.1

    Range
    8874564..8880529 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014171004.2 → XP_014026479.2  VIP36-like protein isoform X2

    UniProtKB/TrEMBL
    A0A1S3PGC6
    Related
    ENSSSAP00000165839.1, ENSSSAT00000183938.1

  2. XM_014171003.2 → XP_014026478.2  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A1S3PFK0
    Related
    ENSSSAP00000091865.2, ENSSSAT00000126080.2
Nucleotide Protein
Heading Accession and Version

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