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LOC106582445 heparan-sulfate 6-O-sulfotransferase 3-B-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106582445, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106582445
Gene description
heparan-sulfate 6-O-sulfotransferase 3-B-like
See related
Ensembl:ENSSSAG00000081069
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106582445 in Genome Data Viewer
Location:
chromosome: ssa21
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa21 NC_059462.1 (48823136..48978699)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa21 NC_027320.1 (49346438..49497310)

Chromosome ssa21 - NC_059462.1Genomic Context describing neighboring genes Neighboring gene claudin-10 Neighboring gene claudin-10 Neighboring gene 2-oxoglutarate receptor 1-like Neighboring gene muscleblind-like protein 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 3-B-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059462.1 Reference Ssal_v3.1

    Range
    48823136..48978699
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014165560.2 → XP_014021035.2  heparan-sulfate 6-O-sulfotransferase 3-B-like

    Related
    ENSSSAP00000119219.2, ENSSSAT00000154511.2
Nucleotide Protein
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Gene LinkOut

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