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mgat1a alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase a [ Salmo salar (Atlantic salmon) ]

Gene ID: 106582341, updated on 30-Nov-2023

Summary

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Gene symbol
mgat1a
Gene description
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase a
See related
Ensembl:ENSSSAG00000110922
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See mgat1a in Genome Data Viewer
Location:
chromosome: ssa02
Exon count:
3
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa02 NC_059443.1 (37793698..37797815, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa02 NC_027301.1 (26633240..26637335, complement)

Chromosome ssa02 - NC_059443.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid type B receptor subunit 1-like Neighboring gene SH3 domain-binding protein 5-like Neighboring gene ring finger protein 183 Neighboring gene DEAH (Asp-Glu-Ala-His) box polypeptide 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059443.1 Reference Ssal_v3.1

    Range
    37793698..37797815 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014165338.2 → XP_014020813.1  alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase

    UniProtKB/TrEMBL
    A0A1S3NZJ8
    Related
    ENSSSAP00000181789.1, ENSSSAT00000222959.1
    Conserved Domains (1) summary
    cd02514
    Location:98 → 428
    GT13_GLCNAC-TI; GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides
Nucleotide Protein
Heading Accession and Version

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