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LOC106582296 GDP-fucose protein O-fucosyltransferase 2-like [ Salmo salar (Atlantic salmon) ]

Gene ID: 106582296, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106582296
Gene description
GDP-fucose protein O-fucosyltransferase 2-like
See related
Ensembl:ENSSSAG00000059086
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106582296 in Genome Data Viewer
Location:
chromosome: ssa21
Exon count:
9
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa21 NC_059462.1 (38325834..38334381, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa21 NC_027320.1 (39428030..39436542, complement)

Chromosome ssa21 - NC_059462.1Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon UAC) Neighboring gene uncharacterized LOC123729574 Neighboring gene unconventional myosin-Ib-like Neighboring gene basic leucine zipper and W2 domain-containing protein 1-A-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables peptide-O-fucosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked fucosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
GDP-fucose protein O-fucosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059462.1 Reference Ssal_v3.1

    Range
    38325834..38334381 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014165231.2 → XP_014020706.1  GDP-fucose protein O-fucosyltransferase 2-like

    UniProtKB/TrEMBL
    A0A1S3NZJ9
    Related
    ENSSSAP00000066484.1, ENSSSAT00000097787.2
    Conserved Domains (2) summary
    cd11298
    Location:64 → 433
    O-FucT-2; GDP-fucose protein O-fucosyltransferase 2
    pfam10250
    Location:69 → 427
    O-FucT; GDP-fucose protein O-fucosyltransferase
Nucleotide Protein
Heading Accession and Version

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