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LOC106582142 phosphatidylinositol N-acetylglucosaminyltransferase subunit A [ Salmo salar (Atlantic salmon) ]

Gene ID: 106582142, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106582142
Gene description
phosphatidylinositol N-acetylglucosaminyltransferase subunit A
See related
Ensembl:ENSSSAG00000024370
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC106582142 in Genome Data Viewer
Location:
chromosome: ssa21
Exon count:
7
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa21 NC_059462.1 (26597051..26603862, complement)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa21 NC_027320.1 (26671099..26677826, complement)

Chromosome ssa21 - NC_059462.1Genomic Context describing neighboring genes Neighboring gene GA-binding protein alpha chain-like Neighboring gene amyloid-beta A4 protein-like Neighboring gene CD276 antigen Neighboring gene gastrin-releasing peptide receptor-like Neighboring gene synaptotagmin-like protein 5 Neighboring gene transfer RNA glutamic acid (anticodon UUC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol N-acetylglucosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in GPI anchor biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphatidylinositol N-acetylglucosaminyltransferase subunit A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059462.1 Reference Ssal_v3.1

    Range
    26597051..26603862 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014164916.2 → XP_014020391.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit A

    UniProtKB/TrEMBL
    A0A1S3NYN8
    Related
    ENSSSAP00000077655.2, ENSSSAT00000111182.2
    Conserved Domains (1) summary
    cd03796
    Location:34 → 433
    GT4_PIG-A-like; phosphatidylinositol N-acetylglucosaminyltransferase subunit A and similar proteins

  2. XM_045704621.1 → XP_045560577.1  phosphatidylinositol N-acetylglucosaminyltransferase subunit A

    UniProtKB/TrEMBL
    A0A1S3NYN8
    Conserved Domains (1) summary
    cd03796
    Location:34 → 433
    GT4_PIG-A-like; phosphatidylinositol N-acetylglucosaminyltransferase subunit A and similar proteins
Nucleotide Protein
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