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LOC106581818 polypeptide N-acetylgalactosaminyltransferase 5 [ Salmo salar (Atlantic salmon) ]

Gene ID: 106581818, updated on 30-Nov-2023

Summary

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Gene symbol
LOC106581818
Gene description
polypeptide N-acetylgalactosaminyltransferase 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo salar
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
galnt5
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Genomic context

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See LOC106581818 in Genome Data Viewer
Location:
chromosome: ssa21
Exon count:
10
Annotation release Status Assembly Chr Location
102 current Ssal_v3.1 (GCF_905237065.1) ssa21 NC_059462.1 (14192180..14201757)
100 previous assembly ICSASG_v2 (GCF_000233375.1) ssa21 NC_027320.1 (14114977..14124477)

Chromosome ssa21 - NC_059462.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor subfamily 4 group A member 2 Neighboring gene glycerol-3-phosphate dehydrogenase, mitochondrial Neighboring gene uncharacterized LOC106581820 Neighboring gene cytohesin 1 interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A de novo Full-Length mRNA Transcriptome Generated From Hybrid-Corrected PacBio Long-Reads Improves the Transcript Annotation and Identifies Thousands of Novel Splice Variants in Atlantic Salmon. Ramberg S, et al. Front Genet, 2021. PMID 33986770, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypeptide N-acetylgalactosaminyltransferase 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo salar Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Ssal_v3.1

Genomic

  1. NC_059462.1 Reference Ssal_v3.1

    Range
    14192180..14201757
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_014164195.2 → XP_014019670.2  polypeptide N-acetylgalactosaminyltransferase 5

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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